Welcome to RISK Network Documentation

RISK (Regional Inference of Significant Kinships) is a scalable, modular tool for annotating and visualizing biological networks. It combines clustering, statistical overrepresentation, and clean publication-ready visualizations—all in one streamlined package.

Whether you're new to RISK or just looking to fine-tune your workflow, these docs walk you through setup, usage, and advanced features.

Getting Started

Start here to set up and understand the basics:

• 0. Intro: Overview and key concepts
• 1. Installation: Install RISK on your system

You can also explore the tutorial notebook:

• Launch Quickstart in Binder (no install)
• View Full Tutorial (HTML)
• Download Tutorial Notebook and Data (.zip)

Core Features

• 2. Network Input
• 3. Annotation
• 4. Statistics
• 5. Load & Analyze Graph
• 6. Visualization

Advanced Use

• 7. Advanced Plotting
• 8. Parameter Export

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If you’re working in a Jupyter notebook, download tutorial.zip for a fully interactive example. Or view the static HTML version at tutorial.html.

Contributions welcome on GitHub. You can also explore the RISK source code on GitHub.